| Accession | HsInv1402 | Region of the inversion | chr2:33613088-33623773 |
| Status | Validated | Prediction type | Simple |
| Estimated Inversion Size | 703 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Inverts a region within an exon of a gene | Breakpoint 1 | chr2:33613088-33623058 |
| Ancestral orientation | NA | Breakpoint 2 | chr2:33613776-33623773 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
| Description | Discovery, genotyping and phasing of structural variants detected from Illumina whole genome sequencing data of 769 individuals from 250 Dutch families belonging to the GoNL project | ||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||
| Name | |||
| Breakpoint 1 | chr2:33618088-33618088 | Breakpoint 2 | chr2:33618773-33618773 |
| Individuals | |||
| Description | Integrated analysis of structural variants in 2,504 human genomes through short-read and long-read DNA sequencing and statistical imputation using the 1000 Genomes Project data | ||||||||||
| Method | Paired-end mapping (PEM), Long-read sequencing | ||||||||||
| Name | |||
| Breakpoint 1 | chr2:33618058-33618058 | Breakpoint 2 | chr2:33618776-33618776 |
| Individuals | 398 out of 2504 individuals
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+ Validation and genotyping
| Description | Discovery, genotyping and phasing of structural variants detected from Illumina whole genome sequencing data of 769 individuals from 250 Dutch families belonging to the GoNL project | ||||
| Method | Polymerase chain reaction (PCR) |
| Status | Validated |
| Comment | Tested in sample A105c |
| Description | Integrated analysis of structural variants in 2,504 human genomes through short-read and long-read DNA sequencing and statistical imputation using the 1000 Genomes Project data | ||||
| Method | Sequence analysis |
| Status | Validated |
| Comment | Inversion flanked by a deletion validated by sequence analysis of PacBio long reads from long-range PCR amplicons, PacBio long reads from fosmids |
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr2:33613088-33623058 | Breakpoint 2 | chr2:33613776-33623773 | ||
| Definition method | Default informatic definition | ||||
| Mechanism of origin |
ND
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| Flexibility | 11.25 | GC content | 0.39 | Stability | 1.83 |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
- RASGRP3
| Gene position | chr2:33592445-33643302 |
| Mechanism | Inverts a region within an exon of a gene |
+ Inversion phenotypical effects
Not defined
+ Report history
- 2017-09-29 00:00:00
| Breakpoint 1 | chr2:33613088-33623058 | Breakpoint 2 | chr2:33613776-33623773 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2017-09-18 00:00:00
| Breakpoint 1 | chr2:33613058-33623058 | Breakpoint 2 | chr2:33613776-33623776 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
