| Accession | HsInv0395 | Region of the inversion | chrX:55507926-55551594 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 29,052 bp | Supporting predictions | 1 |
| Inverted allele frequency | ND | Mechanism of origin | NAHR |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chrX:55507926-55522544 |
| Ancestral orientation | NA | Breakpoint 2 | chrX:55536977-55551594 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chrX:55494082-55508045 | Breakpoint 2 | chrX:55551201-55566984 | ||||||||||||||||||||
| D/C Score | -1.39 | Disc. Support Prob. | 0.12711 | ||||||||||||||||||||
| Support | 21 probes  | ||||||||||||||||||||||
| Individuals |
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+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chrX:55507926-55522544 | Breakpoint 2 | chrX:55536977-55551594 | |||||||||||||
| Description | Complete sequenced Fosmid analisis | |||||||||||||||
| Definition method | Manual curation | |||||||||||||||
| Mechanism of origin |
NAHR
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| Flexibility | 11.22 | GC content | 0.4 | Stability | 1.83 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chrX:55496688-55523299 | 26,612 | chrX:55536222-55562830 | 26,609 | 1.000 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:37
| Breakpoint 1 | chrX:55507926-55522544 | Breakpoint 2 | chrX:55536977-55551594 |
| Assembly | hg18 | ||
| Description | Complete sequenced Fosmid analisis | ||
| Definition method | Manual curation | ||
- 2015-02-23 10:14:37
| Breakpoint 1 | chrX:55494082-55508045 | Breakpoint 2 | chrX:55551201-55566984 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
