| Accession | HsInv0390 | Region of the inversion | chrX:103128292-103192922 |
| Status | Predicted | Prediction type | Simple |
| Estimated Inversion Size | 64,359 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chrX:103128292-103128583 |
| Ancestral orientation | NA | Breakpoint 2 | chrX:103192670-103192922 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
| Description | Paired-end mapping analysis of the J. Craig Venter genome (HuRef) | ||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||
| Name | |||||||
| Breakpoint 1 | chrX:103099697-103133528 | Breakpoint 2 | chrX:103187700-103215332 | ||||
| Individuals |
| ||||||
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chrX:103128292-103128583 | Breakpoint 2 | chrX:103192670-103192922 | ||||||||||||||||||||
| D/C Score | -4.91 | Disc. Support Prob. | 0.26432 | ||||||||||||||||||||
| Support | 50 probes  | ||||||||||||||||||||||
| Individuals |
| ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chrX:103128292-103128583 | Breakpoint 2 | chrX:103192670-103192922 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
|
|||||||||||||||
| Flexibility | 11.43 | GC content | 0.3 | Stability | 1.67 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chrX:103110325-103130664 | 20,340 | chrX:103190653-103210993 | 20,341 | 0.994 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:37
| Breakpoint 1 | chrX:103128292-103128583 | Breakpoint 2 | chrX:103192670-103192922 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:37
| Breakpoint 1 | chrX:103128292-103128583 | Breakpoint 2 | chrX:103192670-103192922 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
- 2015-02-23 10:14:37
| Breakpoint 1 | chrX:103128292-103128583 | Breakpoint 2 | chrX:103192670-103192922 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
