| Accession | HsInv0233 | Region of the inversion | chr1:108559974-108824904 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 166,155 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr1:108559974-108660059 |
| Ancestral orientation | NA | Breakpoint 2 | chr1:108727437-108824904 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr1:108559974-108592296 | Breakpoint 2 | chr1:108792468-108824904 | ||||||||||||||||||||
| D/C Score | -2.45 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 6 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr1:108624004-108660059 | Breakpoint 2 | chr1:108727437-108758802 | ||||||||||||||||||||
| D/C Score | -1.81 | Disc. Support Prob. | 0.00042 | ||||||||||||||||||||
| Support | 5 probes | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr1:108559974-108660059 | Breakpoint 2 | chr1:108727437-108824904 | |||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.42 | GC content | 0.56 | Stability | 1.99 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr1:108565766-108654797 | 89,032 | chr1:108727872-108816809 | 88,938 | 0.997 | Inverted |
| chr1:108580323-108591830 | 11,508 | chr1:108716260-108727851 | 11,592 | 0.991 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:38
| Breakpoint 1 | chr1:108559974-108660059 | Breakpoint 2 | chr1:108727437-108824904 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
