| Accession | HsInv0382 | Region of the inversion | chr20:25672734-26042266 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 247,230 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr20:25672734-25795690 |
| Ancestral orientation | NA | Breakpoint 2 | chr20:25920616-26042266 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr20:25769773-25795690 | Breakpoint 2 | chr20:25920616-25951204 | ||||||||||||||||||||
| D/C Score | -2.73 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 8 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr20:25672734-25702808 | Breakpoint 2 | chr20:26009230-26042266 | ||||||||||||||||||||
| D/C Score | -1.8 | Disc. Support Prob. | 0.00016 | ||||||||||||||||||||
| Support | 8 probes | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr20:25672734-25795690 | Breakpoint 2 | chr20:25920616-26042266 | |||||||||||||||||||
| Definition method | Default informatic definition | |||||||||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 10.44 | GC content | 0.43 | Stability | 1.91 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr20:25681093-25773788 | 92,696 | chr20:25939394-26032413 | 93,020 | 0.995 | Inverted |
| chr20:25773792-25814344 | 40,553 | chr20:25966225-26001333 | 35,109 | 0.938 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:40
| Breakpoint 1 | chr20:25672734-25795690 | Breakpoint 2 | chr20:25920616-26042266 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
