| Accession | HsInv0503 | Region of the inversion | chr9:89724776-89942866 |
| Status | Unreliable prediction | Prediction type | Simple |
| Estimated Inversion Size | 157,337 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr9:89724776-89782218 |
| Ancestral orientation | NA | Breakpoint 2 | chr9:89878800-89942866 |
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Human Polymorphic Inversion DataBase
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General information
- Region map
+ Predictions
- Martinez-Fundichely et al. 2014 (in preparation)
| Description | Accurate prediction of inversions in the human genome from Kidd et al. 2008 fosmid paired-end mapping data using the GRIAL algorithm, and validation of some predictions by sequence analysis and PCR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr9:89744804-89782218 | Breakpoint 2 | chr9:89878800-89918124 | ||||||||||||||||||||
| D/C Score | NA | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 3 probes  | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
| Name | |||||||||||||||||||||||
| Breakpoint 1 | chr9:89724776-89727108 | Breakpoint 2 | chr9:89940534-89942866 | ||||||||||||||||||||
| D/C Score | -7.56 | Disc. Support Prob. | 0 | ||||||||||||||||||||
| Support | 8 probes | ||||||||||||||||||||||
| Individuals |
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| Comments | Below the threshold of the Discordant/Concordant (D/C) ratio score. Below the threshold of the Discordant Support (DS) probability | ||||||||||||||||||||||
+ Validation and genotyping
No validations are found
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr9:89724776-89782218 | Breakpoint 2 | chr9:89878800-89942866 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
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| Flexibility | 12.03 | GC content | 0.28 | Stability | 1.72 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr9:89717506-89747431 | 29,926 | chr9:89915010-89944931 | 29,922 | 0.992 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:41
| Breakpoint 1 | chr9:89724776-89782218 | Breakpoint 2 | chr9:89878800-89942866 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
