| Accession | HsInv0131 | Region of the inversion | chr1:141823775-141969537 |
| Status | Validated | Prediction type | Simple |
| Estimated Inversion Size | 136,505 bp | Supporting predictions | 2 |
| Inverted allele frequency | ND | Mechanism of origin | ND |
| Functional effect | Intergenic breakpoints | Breakpoint 1 | chr1:141823775-141829674 |
| Ancestral orientation | NA | Breakpoint 2 | chr1:141956921-141969537 |
|
|
 |
|
|
Human Polymorphic Inversion DataBase
|
General information
- Region map
+ Predictions
| Description | Paired-end mapping of 3-kb fragments in an African and in a putatively European individual with some predictions validated by PCR, fiber-FISH or comparison with Celera assembly | ||||||||||||||||||||||||||||||||||
| Method | Paired-end mapping (PEM) | ||||||||||||||||||||||||||||||||||
| Name | |||||||||
| Breakpoint 1 | chr1:141822864-141822864 | Breakpoint 2 | chr1:141963731-141963731 | ||||||
| Individuals |
| ||||||||
| Name | |||||||||
| Breakpoint 1 | chr1:141830585-141830585 | Breakpoint 2 | chr1:141962727-141962727 | ||||||
| Individuals |
| ||||||||
+ Validation and genotyping
| Description | Paired-end mapping of 3-kb fragments in an African and in a putatively European individual with some predictions validated by PCR, fiber-FISH or comparison with Celera assembly | ||
| Method | Polymerase chain reaction (PCR) |
| Status | Validated |
+ Frequency
No frequency studied
+ Breakpoints
| Breakpoint 1 | chr1:141823775-141829674 | Breakpoint 2 | chr1:141956921-141969537 | |||||||||||||
| Definition method | Default informatic definition | |||||||||||||||
| Mechanism of origin |
ND
|
|||||||||||||||
| Flexibility | 10.76 | GC content | 0.44 | Stability | 1.86 |
| Position SD1 | Size (bp) | Position SD2 | Size (bp) | Identity | Relative orientation |
| chr1:141792355-141831619 | 39,265 | chr1:141959285-141998688 | 39,404 | 0.975 | Inverted |
+ Evolutionary history
| Ancestral allele | NA | Age | ND |
| Derived allele | NA | Origin | ND |
+ Orientation in other species
Not defined
+ Age
Not defined
+ Origin
Not defined
+ Functional effects
No genes disrupted by the inversion breakpoints
+ Inversion phenotypical effects
Not defined
+ Report history
- 2015-02-23 10:14:59
| Breakpoint 1 | chr1:141823775-141829674 | Breakpoint 2 | chr1:141956921-141969537 |
| Assembly | hg18 | ||
| Definition method | Default informatic definition | ||
